https://github.com/juke34/samreadviewer

Small utility to visualise read alignment directly from sam format without reference
https://github.com/juke34/samreadviewer

Last synced: 3 months ago
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Small utility to visualise read alignment directly from sam format without reference

• Host: GitHub
• URL: https://github.com/juke34/samreadviewer
• Owner: Juke34
• License: mit
• Created: 2020-10-01T09:05:58.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2020-11-06T12:24:30.000Z (over 5 years ago)
• Last Synced: 2025-03-05T04:38:52.580Z (over 1 year ago)
• Language: HTML
• Size: 144 KB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# SamReadViewer

Small utility to visualise read alignments directly from `SAM` format without reference.  

The `SAM` format must contains `MD tag`.  

The reference is re-created based on the `CIGAR string` + `the MD tag`.

See here https://juke34.github.io/SamReadViewer/sam2view.html for the service.