https://github.com/k8hertweck/mt_genome_viz

visualization of the human mitochondrial genome
https://github.com/k8hertweck/mt_genome_viz

mitochondria mt-genome visualization

Last synced: 4 days ago
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visualization of the human mitochondrial genome

• Host: GitHub
• URL: https://github.com/k8hertweck/mt_genome_viz
• Owner: k8hertweck
• Created: 2017-07-04T20:07:06.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2018-01-30T21:54:20.000Z (almost 7 years ago)
• Last Synced: 2023-10-20T20:53:39.022Z (about 1 year ago)
• Topics: mitochondria, mt-genome, visualization
• Language: R
• Size: 1.37 MB
• Stars: 6
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# mt_genome_viz

Visualization of the human mitochondrial genome

Circular visualization of the human mitochondrial genome using R and circos. 

To create Figure 1 from [Hertweck and Dasgupta, 2017](https://www.frontiersin.org/articles/10.3389/fonc.2017.00262/full):

* execute `mt_genome.R` from the project directory.

* from `circos/`, execute `PATH/TO/CIRCOS/circos -conf circos.conf`

Additional scripts with example code from R packages for circular visualization are in `examples`.