https://github.com/karchinlab/open-cravat
A modular annotation tool for genomic variants
https://github.com/karchinlab/open-cravat
annotation-tool bioinformatics bioinformatics-pipeline bioinformatics-tool genomic-data-analysis genomics javascript python python3 variant-analysis variant-annotation variant-annotations
Last synced: 16 days ago
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A modular annotation tool for genomic variants
- Host: GitHub
- URL: https://github.com/karchinlab/open-cravat
- Owner: KarchinLab
- License: mit
- Created: 2018-07-03T17:31:00.000Z (almost 7 years ago)
- Default Branch: master
- Last Pushed: 2025-01-21T18:39:41.000Z (3 months ago)
- Last Synced: 2025-02-17T09:27:56.196Z (2 months ago)
- Topics: annotation-tool, bioinformatics, bioinformatics-pipeline, bioinformatics-tool, genomic-data-analysis, genomics, javascript, python, python3, variant-analysis, variant-annotation, variant-annotations
- Language: JavaScript
- Homepage:
- Size: 9.14 MB
- Stars: 118
- Watchers: 21
- Forks: 28
- Open Issues: 28
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Metadata Files:
- Readme: README.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
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README
Open-CRAVAT is a python package that performs genomic variant interpretation including variant impact, annotation, and scoring. It has a modular architecture with a wide variety of analysis modules that are developed both by the CRAVAT team and the broader variant analysis community. Open-CRAVAT is a product of the [Karchin Lab](http://karchinlab.org/) at Johns Hopkins University with funding provided by the National Cancer Institute's [ITCR](https://itcr.cancer.gov/) program.
# Links
Please see: [Open-CRAVAT Docs](https://open-cravat.readthedocs.io/en/latest/index.html) for installation instructions and software documentation.
Please report issues using the github issue tracker above.
Check out our landing page at [opencravat.org](https://opencravat.org)