https://github.com/karthik/tradeoff

revisiting classic life-history tradeoffs with realistic assumptions.
https://github.com/karthik/tradeoff

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revisiting classic life-history tradeoffs with realistic assumptions.

• Host: GitHub
• URL: https://github.com/karthik/tradeoff
• Owner: karthik
• Created: 2012-05-18T04:20:33.000Z (over 12 years ago)
• Default Branch: master
• Last Pushed: 2012-10-15T15:45:48.000Z (about 12 years ago)
• Last Synced: 2024-10-13T19:10:30.775Z (3 months ago)
• Language: R
• Size: 7.91 MB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Life-history tradeoff analysis

author: Karthik Ram, [[email protected]](mailto:[email protected])

This repository contains all the code for my paper on life history trade off analysis. Basic organizational setup.

```

td1 (growth rate versus juvenile survival)

	|_analysis

	|_results

	|_viz (visualization)

td3 (growth rate versus fecundity)

	|_analysis

	|_results

	|_viz (visualization)

```

Each trade off folder has a more detailed README.

## Required R dependencies

`plyr`, `reshape2`, `ggplot2`, `varDev` (I am using an edited version saved as `varDev2`).

## Manuscript

Current version of the manuscript is in the `manuscript/` folder. To update the `PDF` and `.docx` version to most current, run the following commands:

```

# To generate a PDF

pandoc -s -S --bibliography tradeoff.bib --mathjax --csl the-american-naturalist.csl tradeoffms.md -o ms.pdf

# To generate a word document.

pandoc -s -S --bibliography tradeoff.bib --mathjax --csl the-american-naturalist.csl tradeoffms.md -o ms.docx

```