https://github.com/kdm9/bfxblob

Just gimmie the binaries already...
https://github.com/kdm9/bfxblob

Last synced: 3 days ago
JSON representation

Just gimmie the binaries already...

• Host: GitHub
• URL: https://github.com/kdm9/bfxblob
• Owner: kdm9
• License: mpl-2.0
• Created: 2024-10-18T19:27:11.000Z (28 days ago)
• Default Branch: main
• Last Pushed: 2024-10-25T05:18:30.000Z (22 days ago)
• Last Synced: 2024-10-25T07:30:58.305Z (22 days ago)
• Language: Shell
• Size: 15.6 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

        
# BFXBLOB -- binaries for bioinformatics

```

# by default, installs to ~/.local/   To change, do:

#export BFXBLOB_ROOT=/some/path/to/your/opt/dir 

curl -L https://github.com/kdm9/bfxblob/raw/refs/heads/main/bfxblob.sh | bash

```

This is a "quick start" script for new servers, to install the stuff I use the most, namely:

- csvtk, seqkit, and taxonkit

- duckdb

- samtools, bcftools, htslib

- Python >=3.12

Because some stuff is installed from source, the following packages are required (hopefully they're already installed):

```

apt install build-essential libbz2-dev libc6-dev libcurl4-openssl-dev libffi-dev \

	libgdbm-dev liblzma-dev libncurses-dev libncursesw5-dev libreadline-dev \

	libsqlite3-dev libssl-dev libzstd-dev tk-dev unzip wget zlib1g-dev

```