https://github.com/kdm9/degpy

https://github.com/kdm9/degpy

Last synced: about 2 months ago
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• Host: GitHub
• URL: https://github.com/kdm9/degpy
• Owner: kdm9
• Created: 2012-10-25T10:49:56.000Z (over 12 years ago)
• Default Branch: master
• Last Pushed: 2012-12-10T02:07:11.000Z (over 12 years ago)
• Last Synced: 2025-02-14T21:46:50.458Z (4 months ago)
• Language: Python
• Size: 114 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.txt

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README

        

create

FOR EACH of sRNAs, deg reads:

    remove t/rRNA

map exact

make overall hgram and stats

Normalise each sample

pick peaks

select distinct category < 2 peaks

select disticnt sirnas, filter

map to siRNA

loop thru data, keep only replicated peaks