https://github.com/kdm9/pyngsqc

A pure-python next-gen sequencing quality control library, and soon to be command line tool
https://github.com/kdm9/pyngsqc

Last synced: 11 days ago
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A pure-python next-gen sequencing quality control library, and soon to be command line tool

• Host: GitHub
• URL: https://github.com/kdm9/pyngsqc
• Owner: kdm9
• Created: 2012-09-09T13:19:20.000Z (about 12 years ago)
• Default Branch: master
• Last Pushed: 2013-07-06T12:38:19.000Z (over 11 years ago)
• Last Synced: 2024-10-11T19:23:02.038Z (about 1 month ago)
• Language: Python
• Homepage:
• Size: 564 KB
• Stars: 1
• Watchers: 1
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
pyNGSQC

=======

[![Build Status](https://travis-ci.org/kdmurray91/pyNGSQC.png)](https://travis-ci.org/kdmurray91/pyNGSQC)

pyNGSQC is a python re-write of many of the functions of the fastx tookit,

seqtk, FastQC and other similar next-gen sequencing quality control tools

It is designed to be fast (and particularly, compatible with PyPy), memory

efficient, and import-able into existing or new python programs or pipelines.

Installation

============

```

python setup.py install

python setup.py test

```