https://github.com/kdm9/radhax

Scripts for analysis of reduced-representation sequencing (GBS, RADseq)
https://github.com/kdm9/radhax

Last synced: 11 days ago
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Scripts for analysis of reduced-representation sequencing (GBS, RADseq)

• Host: GitHub
• URL: https://github.com/kdm9/radhax
• Owner: kdm9
• License: gpl-3.0
• Created: 2015-06-02T06:18:54.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2023-10-28T13:22:09.000Z (about 1 year ago)
• Last Synced: 2024-10-11T19:22:59.135Z (about 1 month ago)
• Language: Python
• Size: 70.3 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

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README

        
RADHAX

======

Scripts for analysis of reduced-representation sequencing (GBS, RADseq)

`radsim`

========

Simulates GBS/RAD digests.

### Installation

    pip install radsim

### Usage

There are three commands in radsim

##### ``radsim-digest``

Digitally digests the reference genome, returning GBS fragments.

##### ``radsim-rebed``

Returns a BED file of restriction sites. Optionally, one can return a window

around each RE site, to simulate digest-then-random-fragment libraries like the

original RADseq (`--length`).