https://github.com/kdm9/raugraf
https://github.com/kdm9/raugraf
Last synced: about 2 months ago
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- Host: GitHub
- URL: https://github.com/kdm9/raugraf
- Owner: kdm9
- License: mpl-2.0
- Created: 2024-01-29T16:03:33.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2025-03-19T09:06:24.000Z (3 months ago)
- Last Synced: 2025-03-19T10:23:27.959Z (3 months ago)
- Language: Python
- Size: 42 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Raugraf
Pangenomic diversity metrics. DOI: 10.5281/zenodo.13144148
# Install
```
pipx install raugraf
```
# Tools
## Local Complexity/Node Radius
```
raugraf local-complexity \
--graph mygraph.gfa \ # GFA from PGGB (or at least passed thru smooothxg and odgi)
--jumps 20 \ # Traverse up to 20 nodes away from the focal node
--node-bed out.bedGraph # Bedgraph of local complexity per node for each path in the pangenome
```