https://github.com/kdm9/tabletk

Process tabular data quickly
https://github.com/kdm9/tabletk

Last synced: 11 days ago
JSON representation

Process tabular data quickly

• Host: GitHub
• URL: https://github.com/kdm9/tabletk
• Owner: kdm9
• License: gpl-3.0
• Created: 2014-03-13T05:50:52.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2014-07-22T08:29:16.000Z (over 10 years ago)
• Last Synced: 2024-10-11T19:23:00.175Z (about 1 month ago)
• Language: C
• Homepage:
• Size: 297 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

Awesome Lists containing this project

README

        
Table Toolkit

=============

Several fast utilities to process tabular data row-wise. Specifically, these

tools target tables too big to fit into memory

Note - this is all very alpha code, don't rely on it actually working. It will

be tidied up soon enough though.

filterTable

-----------

Filter tabular data quickly by non-zero cells or row medians

tableDist

---------

Calculate Manhattan or Canberra distance matrices from tablular data by building

distance matricies row-wise

Installation

============

We use cmake as the build system, so instead of the customary

`./configure && make && make install`, use the following. Cmake doesn't take a

`--prefix` option, please use the analagous `-DCMAKE_INSTALL_PREFIX=` option to

`cmake` to install `tableTK` binaries in a non-standard location. Cmake is also

able to create windows-compatible build configurations, although this has not

been attempted ([see here](http://www.cmake.org/cmake/help/runningcmake.html)).

    git clone --recursive https://github.com/kdmurray91/tableTK.git tableTK

    cd tableTK

    mkdir build && cd build

    # optional: -DCMAKE_INSTALL_PREFIX=/path/to/prefix e.g. /usr/local

    cmake -DCMAKE_BUILD_TYPE=RELEASE ..

    make

    ctest

    make install

Usage

=====

Run each utility with no arguments or with `-h` to receive a help message.