https://github.com/kehaowu/gwascfdr

https://github.com/kehaowu/gwascfdr

Last synced: 3 months ago
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• Host: GitHub
• URL: https://github.com/kehaowu/gwascfdr
• Owner: KehaoWu
• License: mit
• Created: 2015-09-18T15:30:59.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2015-11-22T01:13:43.000Z (about 9 years ago)
• Last Synced: 2023-10-20T20:55:51.654Z (about 1 year ago)
• Language: R
• Size: 13.7 KB
• Stars: 6
• Watchers: 3
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# GWAS_cFDR

## Installation

  

```R  

install.packages("devtools")

devtools::install_github("KehaoWu/GWAScFDR")

```

  

## Demo

```R

p1 = runif(10000,0,1)

p2 = runif(10000,0,1)

cFDR(p1,p2)

p = stratifiedQQplot(p1,p2)

plot(p)

```

```R

pvalue = runif(100)

bp = sample(10000:20000,100)

chr = sample(1:22,100,replace=T)

gene = as.character(1:100)

p = manhattanPlot(pvalue = pvalue,bp = bp,chr = chr,gene = gene)

plot(p)

```