https://github.com/keller-mark/vitessce-human-neocortex-example

https://github.com/keller-mark/vitessce-human-neocortex-example

Last synced: 3 months ago
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• Host: GitHub
• URL: https://github.com/keller-mark/vitessce-human-neocortex-example
• Owner: keller-mark
• Created: 2021-03-23T17:28:09.000Z (about 4 years ago)
• Default Branch: main
• Last Pushed: 2021-03-23T19:23:00.000Z (about 4 years ago)
• Last Synced: 2025-01-12T14:11:18.037Z (5 months ago)
• Language: Jupyter Notebook
• Size: 7.81 KB
• Stars: 0
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# vitessce-human-neocortex-example

## Setup

Create the conda environment and install the Python dependencies

```sh

conda env create -f environment.yml

```

Install [http-server](https://github.com/http-party/http-server#installation) (with homebrew if using Mac).

## Move data files to the `data` directory

Move `CellByFeature_Matrix.csv` to `data/CellByFeature_Matrix.csv`.

## Run the notebook

Activate the conda environment, then start JupyterLab and open the `process_data_for_vitessce.ipynb` Jupyter notebook.

```sh

conda activate vitessce-human-neocortex-env

jupyter lab

```