https://github.com/kellylab/infograf
R functions
https://github.com/kellylab/infograf
data-table entropy ggraph graph-theory igraph information-theory mds pcoa r
Last synced: 4 months ago
JSON representation
R functions
- Host: GitHub
- URL: https://github.com/kellylab/infograf
- Owner: kellylab
- License: mit
- Created: 2017-06-08T17:18:21.000Z (about 9 years ago)
- Default Branch: master
- Last Pushed: 2017-09-12T14:18:26.000Z (almost 9 years ago)
- Last Synced: 2024-01-28T22:37:53.110Z (over 2 years ago)
- Topics: data-table, entropy, ggraph, graph-theory, igraph, information-theory, mds, pcoa, r
- Language: R
- Homepage:
- Size: 8.79 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.Rmd
- License: LICENSE
Awesome Lists containing this project
README
---
output:
md_document:
variant: markdown_github
---
Various R functions to help with analyses using Shannon's information theory and graph theory.
Functions:
`CoordCMDS`: classical multidimensional scaling from distance matrix
`genJSD`: generalized Jensen-Shannon divergence
`MakeDistMatrix`: distance matrix from `data.table`
`MakeNonRedundantPairs`: helps with pairwise combinatorial analyses of stuff
`RadialNudge`: for visualizing multiple 'shells' of nodes in a circular graph
# Installation
If you don't already have `devtools`:
```
install.packages("devtools")
```
Install:
```
library(devtools)
install_github("wkc1986/infograf")
```
Use:
```
library(infograf)
```