https://github.com/khanlab/funcmasker-flex

BIDS App for U-net brain masking of fetal bold MRI
https://github.com/khanlab/funcmasker-flex

bids bold masking mri unet

Last synced: 5 months ago
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BIDS App for U-net brain masking of fetal bold MRI

• Host: GitHub
• URL: https://github.com/khanlab/funcmasker-flex
• Owner: khanlab
• Created: 2021-12-09T02:49:41.000Z (over 4 years ago)
• Default Branch: main
• Last Pushed: 2023-05-05T02:46:01.000Z (about 3 years ago)
• Last Synced: 2024-11-11T18:42:16.246Z (over 1 year ago)
• Topics: bids, bold, masking, mri, unet
• Language: Jupyter Notebook
• Homepage: https://funcmasker-flex.readthedocs.io
• Size: 34.7 MB
• Stars: 2
• Watchers: 1
• Forks: 0
• Open Issues: 3
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

• awesome-bids - funcmasker-flex - net brain masking of fetal bold MRI (BIDS Apps / others)

README

          
# funcmasker-flex

Brain masking app using Unet for fetal bold mri

### Example usage:

Get a sample subject dataset:

    datalad install https://github.com/OpenNeuroDatasets/ds003090.git

    cd ds003090/

    datalad get sub-2225

    cd ../

Run `funcmasker-flex` on it:

    

    singularity run -e docker://khanlab/funcmasker-flex:latest  ds003090/ funcmasker participant --participant_label 2225 --cores all