https://github.com/kitestring/scidata

Extracts and cleanses flat data exported from a Chemical Analyzer instrument (Time of Flight Mass Spectrometer), then loads data into a SQL database using a Star schema. A basic CLI is implemented to query SQL database to create data visualizations which describe instrument performance in a simple and digestible manner. The following python libraries are utilized: numpy, pandas, matplotlib, sklearn, statistics, sqlite3, os, time, & datetime.
https://github.com/kitestring/scidata

data-visualization extract matplotlib pandas python3 sql-database

Last synced: 12 days ago
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Extracts and cleanses flat data exported from a Chemical Analyzer instrument (Time of Flight Mass Spectrometer), then loads data into a SQL database using a Star schema. A basic CLI is implemented to query SQL database to create data visualizations which describe instrument performance in a simple and digestible manner. The following python libraries are utilized: numpy, pandas, matplotlib, sklearn, statistics, sqlite3, os, time, & datetime.

• Host: GitHub
• URL: https://github.com/kitestring/scidata
• Owner: kitestring
• Created: 2017-08-18T03:07:26.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2018-05-03T20:53:49.000Z (over 7 years ago)
• Last Synced: 2025-01-19T09:41:55.167Z (12 months ago)
• Topics: data-visualization, extract, matplotlib, pandas, python3, sql-database
• Language: Python
• Homepage:
• Size: 2.07 MB
• Stars: 1
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# SciData

### Application Description

Extracts and cleanses flat data exported from a Chemical Analyzer instrument (Time of Flight Mass Spectrometer), then loads data into a SQL database using a Star schema.  A basic GUI is implemented to query SQL database to create data visualizations which describe instrument performance in a simple and digestible manner.  The following python libraries are utilized: numpy, pandas, matplotlib, sklearn, statistics, sqlite3, os, time, & datetime.  Instance data is stored in JSON format in the dicts.txt text file.

### Command Line Interface (CLI) Example

![GUI](https://github.com/kitestring/SciData/blob/master/SampleOutputs/GUI_Example.png)

### To maintain confidentiality the data examples shown below are not “real” and are simulated data sets.

### Spectral Quality Output Example

![Data Set #1 Example](https://github.com/kitestring/SciData/blob/master/SampleOutputs/OFN_SpectralQuality.png)

### System Linearity Output Example

![Data Set #2 Example](https://github.com/kitestring/SciData/blob/master/SampleOutputs/OFN-QuantCurve.png)