https://github.com/kitwaremedical/itkioscanco

ITK Image IO for Scanco MicroCT .ISQ files
https://github.com/kitwaremedical/itkioscanco

imaging itk-module micro-ct scanco

Last synced: 4 days ago
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ITK Image IO for Scanco MicroCT .ISQ files

• Host: GitHub
• URL: https://github.com/kitwaremedical/itkioscanco
• Owner: KitwareMedical
• License: apache-2.0
• Created: 2017-05-19T02:32:43.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2024-06-25T23:05:57.000Z (6 months ago)
• Last Synced: 2024-12-08T01:50:33.777Z (15 days ago)
• Topics: imaging, itk-module, micro-ct, scanco
• Language: C++
• Homepage: https://itk-io-scanco-app.on.fleek.co/
• Size: 4.67 MB
• Stars: 13
• Watchers: 7
• Forks: 13
• Open Issues: 7
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

Awesome Lists containing this project

README

        
ITKIOScanco

===========

.. image:: https://github.com/KitwareMedical/ITKIOScanco/workflows/Build,%20test,%20package/badge.svg

    :target: https://github.com/KitwareMedical/ITKIOScanco/actions/workflows/build-test-package.yml

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    :target: https://github.com/KitwareMedical/ITKIOScanco/actions/workflows/test-notebooks.yml

    :alt: Notebooks tests

.. image:: https://img.shields.io/pypi/v/itk-ioscanco.svg

    :target: https://pypi.python.org/pypi/itk-ioscanco

    :alt: PyPI Version

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Overview

--------

An `ITK `_ module to read and write Scanco microCT .isq files.

This package is a resource created by `Kitware `_ et. al. for the community for `Open and Reproducible Musculoskeletal Imaging Research (ORMIR) `_.

ITK is an open-source, cross-platform library that provides developers with an extensive suite of software tools for image analysis. Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and segmenting multidimensional scientific images.

.. image:: https://media.giphy.com/media/W1UCXb57bzGZDOi4kr/giphy.gif

  :alt: ITKIOScano Notebook

Installation

------------

Python

``````

Binary `Python packages `_ are

available for Linux, macOS, and Windows. They can be installed with::

  python -m pip install --upgrade pip

  python -m pip install itk-ioscanco

C++

```

Build the module as a separate project against an ITK build tree::

  git clone https://github.com/KitwareMedical/ITKIOScanco

  mkdir ITKIOScanco-build

  cd ITKIOScanco-build

  cmake -DITK_DIR=/your/path/to/ITK-build ../ITKIOScanco

  cmake --build .

Alternatively, since ITK 5.0, the module can be built by enabling the option::

  Module_IOScanco:BOOL=ON

in ITK's CMake configuration.

Usage

-----

::

  import itk

  image = itk.imread('myvolume.ISQ')

License

-------

This software is distributed under the Apache 2.0 license. Please see the

*LICENSE* file for details.