https://github.com/kiwijuice56/protein-visualizer
Visualizing the function of biological proteins through deep learning. MIT UROP 2024 project
https://github.com/kiwijuice56/protein-visualizer
bioinformatics biology deep-learning opengl pdb protein-structure pyglet python
Last synced: 8 months ago
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Visualizing the function of biological proteins through deep learning. MIT UROP 2024 project
- Host: GitHub
- URL: https://github.com/kiwijuice56/protein-visualizer
- Owner: kiwijuice56
- License: mit
- Created: 2024-01-08T13:06:04.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-02-03T02:12:51.000Z (over 2 years ago)
- Last Synced: 2025-07-24T23:35:44.093Z (11 months ago)
- Topics: bioinformatics, biology, deep-learning, opengl, pdb, protein-structure, pyglet, python
- Language: Python
- Homepage:
- Size: 6.28 MB
- Stars: 4
- Watchers: 1
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE.md
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README
# protein-visualizer
A protein visualization program that uses deep learning to map 3D structure to amino acid function.
See [website](https://kiwijuice56.github.io/protein-visualizer/) for installation and usage details.
## Attribution
- Bepler, T., Berger, B. Learning the protein language: evolution, structure, and function. Cell Systems 12, 6 (2021). https://doi.org/10.1016/j.cels.2021.05.017
- Bepler, T., Berger, B. Learning protein sequence embeddings using information from structure. International Conference on Learning Representations (2019). https://openreview.net/pdf?id=SygLehCqtm
- Gligorijevic, Vladimir and Renfrew, P. Douglas and Kosciolek, Tomasz and Leman, Julia Koehler and Cho, Kyunghyun and Vatanen, Tommi and Berenberg, Daniel and Taylor, Bryn and Fisk, Ian M. and Xavier, Ramnik J. and Knight, Rob and Bonneau, Richard. Structure-based function prediction using graph convolutional networks. Cold Spring Harbor Laboratory (2019). https://doi.org/10.1101/786236.