https://github.com/klausvigo/shinytreeviewer

A simple treeviewer based on the R packages ape and phangorn.
https://github.com/klausvigo/shinytreeviewer

phylogenetic-trees r shiny

Last synced: about 2 months ago
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A simple treeviewer based on the R packages ape and phangorn.

• Host: GitHub
• URL: https://github.com/klausvigo/shinytreeviewer
• Owner: KlausVigo
• License: gpl-3.0
• Created: 2013-12-12T11:56:05.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2019-07-19T21:17:33.000Z (almost 6 years ago)
• Last Synced: 2025-03-22T15:02:15.465Z (2 months ago)
• Topics: phylogenetic-trees, r, shiny
• Language: R
• Homepage:
• Size: 125 KB
• Stars: 9
• Watchers: 6
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
shinyTreeViewer

===============

This repository hosts a simple (phylogenetic) tree viewer which is based mainly on the R packages ape, phangorn and shiny. 

You can run shinyTreeViewer from inside R. You need to have installed recent versions of the ape, devtools, phangorn and shiny package.

    shiny::runGitHub('shinyTreeViewer', 'KlausVigo')

You can launch shinyTreeViewer directly via the [RStudio server](http://klash.shinyapps.io/shinyTreeViewer/).

The R_code tab gives you the R commands used for creating the plot. This allows you to explore with different parameters or can be a starting point to create more sophisticated plots.    

License

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shinyTreeViewer is licensed under the GPLv3.