https://github.com/kostrykin/python-learning-codespace
Molecular Biotechnology, Python Lessons, Template for GitHub Codespaces
https://github.com/kostrykin/python-learning-codespace
codespace-template github-codespaces mobi-fs3-python mobi-fs5-python teaching-tool
Last synced: about 1 month ago
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Molecular Biotechnology, Python Lessons, Template for GitHub Codespaces
- Host: GitHub
- URL: https://github.com/kostrykin/python-learning-codespace
- Owner: kostrykin
- License: mit
- Created: 2024-02-20T15:32:38.000Z (over 1 year ago)
- Default Branch: master
- Last Pushed: 2024-02-21T09:59:35.000Z (over 1 year ago)
- Last Synced: 2025-01-02T16:06:45.022Z (6 months ago)
- Topics: codespace-template, github-codespaces, mobi-fs3-python, mobi-fs5-python, teaching-tool
- Language: Dockerfile
- Homepage:
- Size: 26.4 KB
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# [python-learning-codespace](https://github.com/kostrykin/python-learning-codespace)
This repository provides a template for GitHub Codespaces to be used in [*Lessons on Image Analysis using Python and Jupyter Notebooks* in Molecular Biotechnology](https://github.com/users/kostrykin/projects/4).
**The codespace is configured as follows:**
- VS Code with `ms-toolsai.jupyter` extension
- Python 3.12 (should be selected as default Jupyter kernel, doesn't work reliably)
- Common Python packages for image analysis (numpy, scipy, scikit-image, tifffile, pillow)
Update `.devcontainer/Dockerfile` to add Python packages to be installed.
Dotfiles `**/.*`, Markdown files `**/*.md` are some other auxiliary files (e.g., LICENSE) are hidden in the VS Code file manager. Pylance is disabled.
**To update your existing repository with this template:**
This command will fetch the latest `.devcontainer` and overwrite:
```bash
mkdir -p .devcontainer && wget https://github.com/kostrykin/python-learning-codespace/raw/master/.devcontainer/devcontainer.json -O .devcontainer/devcontainer.json && wget https://github.com/kostrykin/python-learning-codespace/raw/master/.devcontainer/Dockerfile -O .devcontainer/Dockerfile
```