https://github.com/kostrykin/repype

Reproducible, efficient, flexible batch processing using pipelines for sustainable software experiments
https://github.com/kostrykin/repype

batch-processing experiment-design pipeline python python-workflow scientific-computing sustainability sustainable-computing

Last synced: about 1 month ago
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Reproducible, efficient, flexible batch processing using pipelines for sustainable software experiments

• Host: GitHub
• URL: https://github.com/kostrykin/repype
• Owner: kostrykin
• License: mit
• Created: 2023-04-15T20:10:17.000Z (almost 2 years ago)
• Default Branch: master
• Last Pushed: 2024-10-04T09:02:28.000Z (4 months ago)
• Last Synced: 2024-12-17T18:24:35.156Z (about 1 month ago)
• Topics: batch-processing, experiment-design, pipeline, python, python-workflow, scientific-computing, sustainability, sustainable-computing
• Language: Python
• Homepage: https://repype.readthedocs.io
• Size: 1.01 MB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 3
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

Awesome Lists containing this project

README

        
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To support the sustainability of your software experiments

    


      repype


      

      

      

      

      


    

  


**Installation:**

.. code::

    git clone [email protected]:kostrykin/repype.git

    cd repype && python setup.py install

**Documentation:** https://repype.readthedocs.io

**Examples:**

- https://github.com/kostrykin/repype/tree/master/examples

- https://github.com/BMCV/SuperDSM

**Development instructions:**

- To run the test suite, first install the testing dependencies::

      pip install -r tests/requirements.txt

      python -m unittest

- Instead of using ``python -m unittest``, use coverage.py to also produce a test coverage report::

      coverage run -m unittest && coverage combine && coverage html

  This requires `coverage.py `_ to be installed additionally, like ``pip install coverage``.

- To build the documentation locally::

      pip install -r docs/requirements.txt

      cd docs

      make html

  You can then open ``build/html/index.html`` to view the documentation.

- To run the Textual interface with debug console::

      textual run --dev repype.textual.app:Repype

  after running ``textual console`` on a different terminal.

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    Copyright (c) 2017-2024 Leonid Kostrykin, Biomedical Computer Vision Group, Heidelberg University


    This work is licensed under the terms of the MIT license. For a copy, see LICENSE.