https://github.com/kpj/paperworld

Projecting the space of scientific publications into three dimensions.
https://github.com/kpj/paperworld

Last synced: 2 months ago
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Projecting the space of scientific publications into three dimensions.

• Host: GitHub
• URL: https://github.com/kpj/paperworld
• Owner: kpj
• Created: 2019-11-29T22:28:49.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2019-12-02T10:29:14.000Z (over 5 years ago)
• Last Synced: 2025-01-18T04:06:55.862Z (4 months ago)
• Language: Python
• Size: 1.74 MB
• Stars: 1
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# PaperWorld

Projecting the space of scientific publications into three dimensions.

![exemplary pointcloud](docs/pointcloud.png)

## Pipeline description

To run the whole pipeline simply execute

```bash

$ snakemake -pr

```

This will:

* Download scientific manuscripts (e.g. PMC)

* Analyze their topics (e.g. using tf-idf)

* Project this high-dimensional space to something more manageable (e.g. using umap)

* Visualize the result interactively in the browser (e.g. using potree)