https://github.com/kpj/retrodicty

Snakemake workflow for the analysis of retrotransposition in Dictyostelium discoideum.
https://github.com/kpj/retrodicty

Last synced: 2 months ago
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Snakemake workflow for the analysis of retrotransposition in Dictyostelium discoideum.

• Host: GitHub
• URL: https://github.com/kpj/retrodicty
• Owner: kpj
• Created: 2021-09-07T11:57:50.000Z (over 3 years ago)
• Default Branch: master
• Last Pushed: 2021-09-07T12:00:45.000Z (over 3 years ago)
• Last Synced: 2025-01-18T04:06:56.431Z (4 months ago)
• Language: Python
• Size: 19.5 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Role of Retrotransposition in Dictyostelium discoideum

Snakemake workflow for the analysis of retrotransposition in Dictyostelium discoideum.

## Usage

To run the workflow, execute the following:

```bash

$ snakemake -prj1 --use-conda

```

## Resources

Data used in this workflow:

* GSE56111

    * GSM1356050 (AGNA_KO): SRX498138

    * GSM1356051 (AX_2_WT): SRX498139

    * GSM1356052 (RRPC_KO): SRX498140