https://github.com/krproject-tech/c_elegans_simulink

An integrated neuromechanical model for the nematode, C. elegans, which is modeled by Jordan H. Boyle.
https://github.com/krproject-tech/c_elegans_simulink

celegans matlab neuromechanical simulink

Last synced: about 1 month ago
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An integrated neuromechanical model for the nematode, C. elegans, which is modeled by Jordan H. Boyle.

• Host: GitHub
• URL: https://github.com/krproject-tech/c_elegans_simulink
• Owner: KRproject-tech
• License: mit
• Created: 2022-11-26T07:01:33.000Z (about 2 years ago)
• Default Branch: main
• Last Pushed: 2024-09-15T14:03:26.000Z (4 months ago)
• Last Synced: 2024-09-15T15:25:36.762Z (4 months ago)
• Topics: celegans, matlab, neuromechanical, simulink
• Language: MATLAB
• Homepage:
• Size: 17 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# C_elegans_Simulink

![License](https://img.shields.io/github/license/yuki-koyama/elasty)





**Communication**



    





**Language**







An integrated neuromechanical model for the nematode, C. elegans,  which is modeled by Jordan H. Boyle (Boyle et al., 2012)[^1].

## Overview

An integrated neuromechanical model for the nematode, C. elegans,  which is modeled by Jordan H. Boyle (Boyle et al., 2012).

This nematode model is ported in MATLAB Simulink, which is verified in MATLAB R2018a, from the implicit solver (SUNDIALS IDA 2.3.0) with C++ of the original paper [^1].

## Block diagram

![image](https://user-images.githubusercontent.com/114337358/204077618-f508f60c-c642-44ee-8ed2-62f99a33cb3e.png)

## Usage

__[Step 1]__ Open "GUI.fig" 

__[Step 2]__ Push "parameter" button

__[Step 3]__ Select the fluid model

__in Water__

```

C_par = 5.2e-6; %% 横方向抗力 [kg/s]

C_per = 3.3e-6; %% 推進方向抗力 [kg/s]

```

__on Agar__

```

C_par = 128e-3; %% 横方向抗力 [kg/s]

C_per = 3.2e-3; %% 推進方向抗力 [kg/s]

```

__[Step 3]__ Execute the "exe.m" to start numerical analysis

__[Step 4]__ Push "plot" button to see results

## Image

__in Water__

![untitled](https://user-images.githubusercontent.com/114337358/204078363-8d8c5584-e77d-4e1f-b329-3f881905d8ab.png)

__on Agar__

![untitled](https://user-images.githubusercontent.com/114337358/204078029-f7bdfb7b-c29b-4289-be38-ac9ead6c833b.png)

## Demonstration movie

[![](https://img.youtube.com/vi/rrz9yFbLrSA/0.jpg)](https://youtu.be/rrz9yFbLrSA)

### Reference

[^1]: Boyle et al., Gait modulation in C. elegans: an integrated neuromechanical model, Frontiers in Computational Neuroscience, Vol. 6, 2012. DOI: 10.3389/fncom.2012.00010.