https://github.com/kyzhouhzau/r-chip-seq
https://github.com/kyzhouhzau/r-chip-seq
Last synced: 7 months ago
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- Host: GitHub
- URL: https://github.com/kyzhouhzau/r-chip-seq
- Owner: kyzhouhzau
- Created: 2018-06-30T10:59:51.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2018-06-30T11:06:45.000Z (over 7 years ago)
- Last Synced: 2025-01-22T12:45:23.624Z (9 months ago)
- Language: R
- Size: 30.3 KB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
ChIPseeker的功能分为三类:
> ● 注释：提取peak附近最近的基因， 注释peak所在区域
> ● 比较：估计ChIP peak数据集中重叠部分的显著性；整合GEO数据集，以便于将当前结果和已知结果比较
> ● 可视化： peak的覆盖情况；TSS区域结合的peak的平均表达谱和热图；基因组注释；TSS距离；peak和基因的重叠。
peak落在了什么地方，启动子？外显子？内含子？还是基因间区？下面用ChIPseeker中的几个函数来绘制分析图。
