https://github.com/laura-budurlean/differentially-mutated-genes

Fisher's tests (with or without) correction for multiple testing on 2x2 contingency tables. Uses a list of genes from two populations to test if any are significantly mutated/disrupted by SVs in one population vs another. Specifically set up to test for SVs affecting genes.
https://github.com/laura-budurlean/differentially-mutated-genes

Last synced: 4 days ago
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Fisher's tests (with or without) correction for multiple testing on 2x2 contingency tables. Uses a list of genes from two populations to test if any are significantly mutated/disrupted by SVs in one population vs another. Specifically set up to test for SVs affecting genes.

• Host: GitHub
• URL: https://github.com/laura-budurlean/differentially-mutated-genes
• Owner: laura-budurlean
• Created: 2023-05-18T17:09:49.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2023-10-09T21:44:58.000Z (over 1 year ago)
• Last Synced: 2023-10-09T22:34:31.694Z (over 1 year ago)
• Language: R
• Size: 7.81 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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# Differentially_mutated_genes

Fisher's tests (with or without) correction for multiple testing on 2x2 contingency tables. Uses a list of genes from two populations to test if any are significantly mutated/disrupted by SVs in one population vs another. The output is a list of genes with P-values and adjusted P-values if necessary. Specifically set up to test for SVs affecting genes.