https://github.com/lauraluebbert/transcriptomics-over-time

Automatically generates plots showing the number of studies using transcriptomics technologies over time.
https://github.com/lauraluebbert/transcriptomics-over-time

Last synced: 2 months ago
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Automatically generates plots showing the number of studies using transcriptomics technologies over time.

• Host: GitHub
• URL: https://github.com/lauraluebbert/transcriptomics-over-time
• Owner: lauraluebbert
• License: bsd-2-clause
• Created: 2023-01-13T19:47:11.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-04-15T02:40:11.000Z (about 1 year ago)
• Last Synced: 2024-04-21T14:08:47.589Z (about 1 year ago)
• Language: Jupyter Notebook
• Size: 33 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# transcriptomics-over-time

![status](https://github.com/lauraluebbert/transcriptomics-over-time/workflows/make_plots/badge.svg)

This repository generates plots showing the increase in studies using transcriptomics technologies over time. The plots are automatically updated every week. Please cite the listed data sources.

**1. Single-cell RNA-sequencing**  

Valentine Svensson, Eduardo da Veiga Beltrame, & Lior Pachter Database, Volume 2020, 2020, baaa073; doi: 10.1093/database/baaa073

Also see:  

https://www.nxn.se/single-cell-studies  

https://www.nxn.se/single-cell-studies/gui

![image](plots/sc_studies_over_time.png)  

![image](plots/sc_cells_over_time.png)

**2. Spatial transcriptomics**  

Moses, L., Pachter, L. Museum of spatial transcriptomics. Nat Methods 19, 534–546 (2022). https://doi.org/10.1038/s41592-022-01409-2

![image](plots/spatial_studies_over_time.png)  

![image](plots/spatial_cells_over_time.png)

**Combined plots:**  

![image](plots/studies_over_time.png)  

![image](plots/cells_over_time.png)