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https://github.com/lcolladotor/recount-brain-bog19
Poster for Biology of Genomes 2019 (#bog19) on recount-brain
https://github.com/lcolladotor/recount-brain-bog19
bog19 brain curated gtex human metadata poster public recount recount2 reproducibility rnaseq sample sra tcga
Last synced: about 2 months ago
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Poster for Biology of Genomes 2019 (#bog19) on recount-brain
- Host: GitHub
- URL: https://github.com/lcolladotor/recount-brain-bog19
- Owner: lcolladotor
- License: mit
- Created: 2019-05-06T17:48:25.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2019-08-23T15:11:06.000Z (over 5 years ago)
- Last Synced: 2024-10-11T22:26:36.733Z (2 months ago)
- Topics: bog19, brain, curated, gtex, human, metadata, poster, public, recount, recount2, reproducibility, rnaseq, sample, sra, tcga
- Language: HTML
- Homepage: https://lcolladotor.github.io/recount-brain-bog19/
- Size: 3.33 MB
- Stars: 0
- Watchers: 3
- Forks: 3
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
recount-brain: a curated repository of human brain RNA-seq datasets metadata
============================================================================
[](https://zenodo.org/badge/latestdoi/185244554)
This repository contains the raw files and rendered poster describing the [`recount-brain` project](https://github.com/LieberInstitute/recount-brain) for [Biology of Genomes 2019](https://meetings.cshl.edu/meetings.aspx?meet=GENOME&year=19) (Poster 63, Session 1, Wednesday May 8th 2018 at 2 pm). This poster was made using [posterdown](https://github.com/brentthorne/posterdown) version 0.1.2.9000 and by customizing the `posterdown_betterport` template provided in that R package.
To view the poster, go to [lcolladotor.github.io/recount-brain-bog19/](https://lcolladotor.github.io/recount-brain-bog19/) or alternatively open the [PDF file](recount-brain-bog19.pdf) which was created using the "print" option with Google Chrome Version 73.0.3683.103 (Official Build) (64-bit).
The `recount-brain` project is further described in [Razmara, et al., bioRxiv, 2019](https://www.biorxiv.org/content/10.1101/618025v1).
[](https://www.biorxiv.org/content/10.1101/618025v1)
## Reproducibility and Citation
```{r}
> ## Reproducibility information:
> library('posterdown')
> library('sessioninfo')
> options(width = 120)
> session_info()
─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 3.5.2 Patched (2019-02-17 r76113)
os macOS Mojave 10.14.4
system x86_64, darwin15.6.0
ui AQUA
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2019-05-06
─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.5.2)
cli 1.1.0 2019-03-19 [1] CRAN (R 3.5.2)
crayon 1.3.4 2017-09-16 [1] CRAN (R 3.5.0)
posterdown * 0.1.2.9000 2019-05-06 [1] Github (brentthorne/posterdown@00da433)
sessioninfo * 1.1.1 2018-11-05 [1] CRAN (R 3.5.0)
withr 2.1.2 2018-03-15 [1] CRAN (R 3.5.0)
[1] /Library/Frameworks/R.framework/Versions/3.5/Resources/library
>
> ## Citation information for recount-brain
> citation('recount')[5]
Razmara A, Ellis SE, Sokolowski DJ, Davis S, Wilson MD, Leek JT, Jaffe AE, Collado-Torres L (2019).
“recount-brain: a curated repository of human brain RNA-seq datasets metadata.” _bioRxiv_. doi:
10.1101/618025 (URL: http://doi.org/10.1101/618025), .
A BibTeX entry for LaTeX users is
@Article{,
title = {recount-brain: a curated repository of human brain RNA-seq datasets metadata},
author = {Ashkaun Razmara and Shannon E. Ellis and Dustin J. Sokolowski and Sean Davis and Michael D. Wilson and Jeffrey T. Leek and Andrew E. Jaffe and Leonardo Collado-Torres},
year = {2019},
journal = {bioRxiv},
doi = {10.1101/618025},
url = {https://doi.org/10.1101/618025},
}
>
> ## For posterdown:
> citation('posterdown')
To cite 'posterdown' in publications use:
W. Brent Thorne (2019). posterdown: An R Packge. R package version 0.1.2.9000.
A BibTeX entry for LaTeX users is
@Manual{,
title = {posterdown: An R Package Built to Generate Reproducible Conference Posters for the Academic and Professional World Where Powerpoint and Pages Just Won't Cut It},
author = {W. Brent Thorne},
year = {2019},
url = {https://github.com/brentthorne/posterdown},
note = {R package version 0.1.2.9000},
}
>
```