https://github.com/lewuathe/covid19-sir

COVID-19 SIR model estimation
https://github.com/lewuathe/covid19-sir

coronavirus covid-19 opendata simulation sir

Last synced: about 1 month ago
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COVID-19 SIR model estimation

• Host: GitHub
• URL: https://github.com/lewuathe/covid19-sir
• Owner: Lewuathe
• License: apache-2.0
• Created: 2020-03-09T14:13:10.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2022-11-22T08:18:23.000Z (about 2 years ago)
• Last Synced: 2024-12-27T05:05:53.218Z (about 1 month ago)
• Topics: coronavirus, covid-19, opendata, simulation, sir
• Language: Python
• Homepage: https://www.lewuathe.com/covid-19-dynamics-with-sir-model.html
• Size: 1.44 MB
• Stars: 130
• Watchers: 6
• Forks: 75
• Open Issues: 19
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# COVID-19 SIR Model Estimation

SIR model estimation on COVID-19 cases dataset. There is a blog post describing the detail of the SIR model and COVID-19 cases dataset.

- [https://www.lewuathe.com/covid-19-dynamics-with-sir-model.html](https://www.lewuathe.com/covid-19-dynamics-with-sir-model.html)

![japan](/Japan.png)

## Usage

All dependencies are resolved by [Pipenv](https://pipenv.kennethreitz.org/en/latest/)

```

$ poetry install

$ poetry run python solver.py

```

Option to run

```

usage: solver.py [-h] [--countries COUNTRY_CSV] [--download-data]

                 [--start-date START_DATE] [--prediction-days PREDICT_RANGE]

                 [--S_0 S_0] [--I_0 I_0] [--R_0 R_0]

optional arguments:

  -h, --help            show this help message and exit

  --countries COUNTRY_CSV

                        Countries on CSV format. It must exact match the data

                        names or you will get out of bonds error.

  --download-data       Download fresh data and then run

  --start-date START_DATE

                        Start date on MM/DD/YY format ... I know ...It

                        defaults to first data available 1/22/20

  --prediction-days PREDICT_RANGE

                        Days to predict with the model. Defaults to 150

  --S_0 S_0             S_0. Defaults to 100000

  --I_0 I_0             I_0. Defaults to 2

  --R_0 R_0             R_0. Defaults to 0

```

## Data Sources

The data used by this simulation is available in:

- [CSSEGISandData/COVID-19](https://github.com/CSSEGISandData/COVID-19)