https://github.com/lgatto/biocmassspecworkinggroup
Bioconductor Mass Spectrometry Working Group
https://github.com/lgatto/biocmassspecworkinggroup
Last synced: about 2 months ago
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Bioconductor Mass Spectrometry Working Group
- Host: GitHub
- URL: https://github.com/lgatto/biocmassspecworkinggroup
- Owner: lgatto
- Created: 2021-09-10T17:12:45.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2022-03-17T15:34:41.000Z (about 3 years ago)
- Last Synced: 2025-01-20T22:55:22.026Z (3 months ago)
- Language: R
- Size: 355 KB
- Stars: 1
- Watchers: 5
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.Rmd
Awesome Lists containing this project
README
# Bioconductor Mass Spectrometry Working Group
the Bioconductor community that are interested and/or active in the
area of mass spectrometry, proteomics and/or metabolomics and define
technical needs or community expectations to prioritise future
developments. More specifically, we suggest the following steps.
- Reference relevant MS/proteomics/metabolomics packages in
Bioconductor and their dependencies. Are there sets of packages that
interoperate? Are there many packages that perform very similar or
identical tasks? Is there scope for better interoperability?
- List active MS/proteomics/metabolomics maintainers/users and invite
them to join the working group.
- Identify missing features and/or areas that the working group could
focus on.
- Promote the usage of the #mass-spectrometry, #proteomics and
#metabolomics channels on slack with the aim to organise regular
(open) meetings and/or dedicated workshops.
```{r contribs, include = FALSE}
source("R/contribs.R")
```
```{r deps, include = FALSE}
source("R/biocdeps.R")
```
## Packages
Bioconductor packages are annotated with *biocView* tags. As of
release 3.14, there are:
```{r ms, echo = FALSE, results = "asis"}
ms_packages <- describeBiocView(bv[["MassSpectrometry"]])
```
Dependency graph (depends and imports):
```{r echo = FALSE}
knitr::include_graphics("./figs/ms_deps.svg")
```
Explore [MassSpectrometry](https://bioconductor.org/packages/release/BiocViews.html#___MassSpectrometry) packages
```{r prot, echo = FALSE, results = "asis"}
prot_packages <- describeBiocView(bv[["Proteomics"]])
```
Dependency graph (depends and imports):
```{r echo = FALSE}
knitr::include_graphics("./figs/prot_deps.svg")
```
Explore [Proteomics](https://bioconductor.org/packages/release/BiocViews.html#___Proteomics) packages
```{r metab, echo = FALSE, results = "asis"}
metabo_packages <- describeBiocView(bv[["Metabolomics"]])
```
Dependency graph (depends and imports):
```{r echo = FALSE}
knitr::include_graphics("./figs/metabo_deps.svg")
```
Explore [Metabolomics](https://bioconductor.org/packages/release/BiocViews.html#___Metabolomics) packages