https://github.com/lgatto/biocpkgs

Retrieve Bioconductor package download data
https://github.com/lgatto/biocpkgs

Last synced: about 2 months ago
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Retrieve Bioconductor package download data

• Host: GitHub
• URL: https://github.com/lgatto/biocpkgs
• Owner: lgatto
• Created: 2017-06-27T21:08:37.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2019-04-19T13:36:44.000Z (about 6 years ago)
• Last Synced: 2025-01-20T22:55:08.252Z (3 months ago)
• Language: R
• Size: 174 KB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md

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README

        
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# The `biocpkgs` package

The `biocpkgs`package offers simple utilities to explore download data

and dependencies of Bioconductor packages. See this

[vignette](https://lgatto.github.io/RforProteomics/articles/biocprot.html)

for a usecase.

## Installation

```{r install, eval = FALSE}

library("devtools")

install_github("lgatto/biocpkgs")

```

## Download statistics

```{r example}

library("biocpkgs")

dl <- pkg_download_data(c("MSnbase", "rpx"))

dl

```

```{r plotex}

library("ggplot2")

ggplot(dl, aes(x = Date, y = Nb_of_distinct_IPs,

                group = package, colour = package)) + geom_line()

```

## Package dependencies

```{r deps0}

library("biocpkgs")

p <- c("MSnbase", "mzR") ## packages of interest

g <- pkg_dep_graph(pkgs = p) 

g

plot_pkg_dep_graph(g, pkgs = p, fs = 25)

```