https://github.com/lgatto/qcmetrics
An R framework for quality control
https://github.com/lgatto/qcmetrics
Last synced: 25 days ago
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An R framework for quality control
- Host: GitHub
- URL: https://github.com/lgatto/qcmetrics
- Owner: lgatto
- Created: 2013-09-08T23:00:56.000Z (over 11 years ago)
- Default Branch: master
- Last Pushed: 2024-02-03T05:31:45.000Z (about 1 year ago)
- Last Synced: 2025-03-24T04:23:29.014Z (about 1 month ago)
- Language: R
- Homepage: http://lgatto.github.io/qcmetrics/
- Size: 6.42 MB
- Stars: 2
- Watchers: 3
- Forks: 4
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
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README
# A General Framework for Quality Control Metrics
## About
The `qcmetrics` package provides a general framework to develope
quality control (QC) pipelines for any type of data that can be
imported into `R`. The application of `qcmetrics` can be schematised
in 5 points
1. Identify a set of quality metrics of interest and implement them
and their visualisation method into individual `QcMetric`
instances.
2. Bundles the `QcMetric` items into a `QcMetrics` instance.
3. Automatically generate reports in pdf of html using the `qcReport`
function using the `QcMetrics` object of step 2 as input.
4. Optionally, reports can be customised.
5. Wrap the above steps into a wrapper function or a new QC package
for production use.
QC pipelines and packages will be described and disseminated through
the [wiki](https://github.com/lgatto/qcmetrics/wiki).
## Installation
*[qcmetrics](http://bioconductor.org/packages/qcmetrics)* is a Bioconductor package and should in
installed with
```r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("qcmetrics")
```
## Bugs and question
Either file a
[GitHub issue](https://github.com/lgatto/qcmetrics/issues) or use the
[Bioconductor support forum](https://support.bioconductor.org/).