https://github.com/lhqing/cemba_data

Mapping pipeline for snmC-seq based technologies.
https://github.com/lhqing/cemba_data

methylation pipeline sequencing single-cell snmc-seq snmc-seq2 snmct-seq

Last synced: 26 days ago
JSON representation

Mapping pipeline for snmC-seq based technologies.

• Host: GitHub
• URL: https://github.com/lhqing/cemba_data
• Owner: lhqing
• License: mit
• Created: 2018-07-06T00:15:05.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2023-09-25T21:00:09.000Z (over 2 years ago)
• Last Synced: 2026-01-04T21:15:11.887Z (4 months ago)
• Topics: methylation, pipeline, sequencing, single-cell, snmc-seq, snmc-seq2, snmct-seq
• Language: Python
• Homepage: https://hq-1.gitbook.io/mc/
• Size: 12.3 MB
• Stars: 20
• Watchers: 1
• Forks: 9
• Open Issues: 8
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
[](http://www.network-science.de/ascii/)


 **    **     **        *******

//**  **     ****      /**////**

 //****     **//**     /**   /**

  //**     **  //**    /*******

   /**    **********   /**////

   /**   /**//////**   /**

   /**   /**     /**   /**

   //    //      //    //



# YAP (Yet Another Pipeline)

Pipeline(s) for mapping and cluster-level aggregation of single nucleus methylome and multi-omic datasets.

Technologies supported:

- snmC-seq(1/2/3)

- snmCT-seq (mC + RNA)

- snmC2T-seq (mC + RNA + Chromatin Accessibility)

- snm3C-seq (mC + Chromatin Conformation)

- any NOMe treated version of the above

[See Documentation](https://hq-1.gitbook.io/mc/)