https://github.com/lieberinstitute/annotationfiles_libd001
Common annotation files we re-use in projects
https://github.com/lieberinstitute/annotationfiles_libd001
Last synced: 6 months ago
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Common annotation files we re-use in projects
- Host: GitHub
- URL: https://github.com/lieberinstitute/annotationfiles_libd001
- Owner: LieberInstitute
- Created: 2021-08-25T15:46:36.000Z (almost 5 years ago)
- Default Branch: main
- Last Pushed: 2021-11-02T18:55:55.000Z (over 4 years ago)
- Last Synced: 2025-07-13T23:04:30.435Z (about 1 year ago)
- Size: 5.86 KB
- Stars: 0
- Watchers: 12
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# annotationFiles_LIBD001
Common annotation files we re-use in projects
## Internal
JHPCE location: `/dcs04/lieber/lcolladotor/annotationFiles_LIBD001`
## Set permissions
```bash
find . -type d | xargs chmod g+s
chmod o+rx -R .
```
### FUSION TWAS reference files
```bash
rsync -rltgvh --chown=:lieber_lcolladotor /dcs04/lieber/lcolladotor/BrainSEQ_LIBD001/brainseq_phase2/twas/reference_hg38/LDREF_hg38/ /dcs04/lieber/lcolladotor/annotationFiles_LIBD001/fusion_twas_LDREF_hg38/
mv /dcs04/lieber/lcolladotor/BrainSEQ_LIBD001/brainseq_phase2/twas/reference_hg38/LDREF_hg38 /dcs04/lieber/lcolladotor/BrainSEQ_LIBD001/brainseq_phase2/twas/reference_hg38/LDREF_hg38_original
ln -s /dcs04/lieber/lcolladotor/annotationFiles_LIBD001/fusion_twas_LDREF_hg38 /dcs04/lieber/lcolladotor/BrainSEQ_LIBD001/brainseq_phase2/twas/reference_hg38/LDREF_hg38
```