https://github.com/likelet/circpipetools
https://github.com/likelet/circpipetools
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/likelet/circpipetools
- Owner: likelet
- Created: 2020-01-17T10:03:49.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2020-08-26T10:51:17.000Z (over 4 years ago)
- Last Synced: 2025-01-07T20:45:55.914Z (4 months ago)
- Language: Java
- Size: 30 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: Readme.md
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README
# circpipeTools
Circpipetools is a collected functions for circRNA analysis in JAVA-based program. It currently provided several scripts for processing
intermediate files used in [circPipe](), which is a nextflow-based pipeline for circRNA identification and quantification from RNA-seq
dataset. Functions like matrix collapses, overlap analysis, circRNA annotation, and deduplication were implemented by circpipeTools.
In addition, it support several output of circRNA analysis programs as the input of the function, and the functions could be directly ported by
adding the parameters in different orders. We believe that the circpipeTool could be a key tools for circRNA analysis in the community.
# Features
## circRNA deduplication
## circRNA overlap analysis
## circRNA annotation
## Sample collapse with different output.
## circRNA sequence extraction
# parameter and usage
# Authors
Qi Zhao [[email protected]]([email protected])