https://github.com/likelet/circrna_colon_recurrent_prediction
https://github.com/likelet/circrna_colon_recurrent_prediction
Last synced: 3 months ago
JSON representation
- Host: GitHub
- URL: https://github.com/likelet/circrna_colon_recurrent_prediction
- Owner: likelet
- License: gpl-3.0
- Created: 2019-03-19T06:48:57.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2019-03-19T07:01:44.000Z (about 6 years ago)
- Last Synced: 2025-01-07T20:45:55.890Z (4 months ago)
- Language: R
- Size: 84 KB
- Stars: 1
- Watchers: 3
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: Readme.md
- License: LICENSE
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README
# CircRNA_colon_recurrent_prediction
# Introducntion
This repo contains the analysis and plot code for constructing cirRNA based signature to predict recurrence of stage II or III colon cancers. For privacy requirement, all patients's information were masked an provided a random number as their identifier in this analysis.
# Citations
# Authors
Qi Zhao and Zi-xian Wang from Sun Yat-sen University
# Sessions for running the command
```R
> sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: macOS Sierra 10.12.6
locale:
[1] zh_CN.UTF-8/zh_CN.UTF-8/zh_CN.UTF-8/C/zh_CN.UTF-8/zh_CN.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_0.12.14 mvtnorm_1.0-6 lattice_0.20-34 tidyr_0.7.2 zoo_1.8-0
[6] assertthat_0.2.0 digest_0.6.13 psych_1.7.5 R6_2.2.2 survminer_0.4.3
[11] plyr_1.8.4 backports_1.1.0 acepack_1.4.1 MatrixModels_0.4-1 ggplot2_3.1.0.9000
[16] rlang_0.3.0.9000 multcomp_1.4-6 lazyeval_0.2.1 data.table_1.10.4 SparseM_1.77
[21] rpart_4.1-10 Matrix_1.2-8 checkmate_1.8.2 splines_3.3.3 stringr_1.2.0
[26] foreign_0.8-67 htmlwidgets_0.8 munsell_0.4.3 broom_0.4.2 pkgconfig_2.0.1
[31] base64enc_0.1-3 mnormt_1.5-5 htmltools_0.3.6 nnet_7.3-12 tibble_1.3.4
[36] gridExtra_2.3 km.ci_0.5-2 htmlTable_1.9 codetools_0.2-15 Hmisc_4.0-3
[41] rms_5.1-1 dplyr_0.7.4 ggpubr_0.1.8.999 MASS_7.3-45 grid_3.3.3
[46] polspline_1.1.12 nlme_3.1-131 xtable_1.8-2 gtable_0.2.0 magrittr_1.5
[51] KMsurv_0.1-5 pROC_1.9.1 scales_0.5.0.9000 stringi_1.1.6 reshape2_1.4.3
[56] bindrcpp_0.2 latticeExtra_0.6-28 survMisc_0.5.4 sandwich_2.3-4 TH.data_1.0-8
[61] Formula_1.2-1 RColorBrewer_1.1-2 tools_3.3.3 cmprsk_2.2-7 glue_1.2.0
[66] purrr_0.2.4 yaml_2.1.14 parallel_3.3.3 survival_2.41-3 colorspace_1.3-2
[71] cluster_2.0.5 knitr_1.20 bindr_0.1 quantreg_5.33
```