https://github.com/likelet/mirnaanalysis

A collection of miRna Analysis pipes
https://github.com/likelet/mirnaanalysis

Last synced: 3 months ago
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A collection of miRna Analysis pipes

• Host: GitHub
• URL: https://github.com/likelet/mirnaanalysis
• Owner: likelet
• Created: 2019-03-29T06:54:35.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2019-11-30T06:51:45.000Z (over 5 years ago)
• Last Synced: 2025-01-07T20:45:55.772Z (4 months ago)
• Language: Nextflow
• Size: 13.7 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# miRnaAnalysis

A collection of miRna Analysis pipes, current function could be used for predicting the miRNA based on the sequences from input dataset.

# Installation

Before use this pipe users should Install the following softare and the configure the `config` file in this folder when use this pipeline at the first time 

    Nextflow

    miranda 

    targetScan

    java 

    R 

    vendiagram package 

# Predicting miRNA target by several tools 

    nextflow run miRnaAnalysis/predictMiRNA.nf -profile c2 --fasta candidates_seq.fa 

`--fasta` the mRNA sequences in fasta  format for predicting.