https://github.com/likelet/volcanop
an R package for simply plot volcano figures based on DE analysis result
https://github.com/likelet/volcanop
Last synced: 11 months ago
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an R package for simply plot volcano figures based on DE analysis result
- Host: GitHub
- URL: https://github.com/likelet/volcanop
- Owner: likelet
- Created: 2017-06-16T16:55:25.000Z (about 9 years ago)
- Default Branch: master
- Last Pushed: 2018-09-04T06:59:01.000Z (almost 8 years ago)
- Last Synced: 2025-04-22T00:18:49.055Z (about 1 year ago)
- Language: R
- Size: 722 KB
- Stars: 5
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# volcanoP
An R package for simply plot volcano figures based on DE analysis result.
Demo site: https://zhaoqi.shinyapps.io/VolcanoP/
### Screen shot
### Install dependencies
To check the dependencies installed correctly, this command can help users to check the status of each installation
```R
library("Packages for check")
```
Code for install dependencies R packages
```R
cDep <- c("ggplot2","shiny","shinyBS","shinydashboard","ggthemes","DT","dplyr","ggrepel","plotly")
###INSTALLED PACKAGES
#get installed list
inst <- packageStatus()$inst
#check and install DEPENDENCIES from CRAN
for(i in 1:length(cDep)){
tag = which(inst$Package == cDep[i])
if(length(tag)){
remove.packages(cDep[i])
}
install.packages(cDep[i])
}
```
### Install volcanoP
To install the latest development build directly from GitHub, run this:
```R
if (!require("devtools"))
install.packages("devtools")
devtools::install_github("likelet/volcanoP")
```
### Update Information
### Designers:
Qi Zhao, zhaoqi@sysucc.org.cn
### Developers:
Qi Zhao, zhaoqi@sysucc.org.cn
### Maintainer:
Qi Zhao
Please feel free contact us.
### Copyright
MIT license