https://github.com/limix/geno-sugar

Utilities for handling genetic data for GWAS
https://github.com/limix/geno-sugar

Last synced: 6 months ago
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Utilities for handling genetic data for GWAS

• Host: GitHub
• URL: https://github.com/limix/geno-sugar
• Owner: limix
• License: apache-2.0
• Created: 2018-09-29T22:14:14.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2018-11-26T18:35:56.000Z (over 6 years ago)
• Last Synced: 2024-10-09T09:58:02.790Z (7 months ago)
• Language: Python
• Homepage:
• Size: 66.4 KB
• Stars: 1
• Watchers: 3
• Forks: 2
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# geno-sugar

[![Travis](https://img.shields.io/travis/com/limix/geno-sugar.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/geno-sugar)[![Documentation](https://img.shields.io/readthedocs/geno-sugar.svg?style=flat-square&version=stable)](https://limix-lmm.readthedocs.io/)

Utility functions to read bed and bgen files and facilitate genome-wide analyses.

While this can be used as a standalone module, this module has been designed to be a building block of [LIMIX2](https://limix.readthedocs.io/en/2.0.0/index.html). LIMIX2 is a python module that makes available a large set of tools for genetic studies, including statistical methods for GWAS, interaction testing and variance component estimation.

## Install

From terminal, it can be installed using [pip](https://pypi.python.org/pypi/pip):

```bash

pip install geno-sugar

```

## Documentation

The public interface and a quick start in python are available at

[http://geno-sugar.readthedocs.io/](http://struct-lmm.readthedocs.io/).

## Problems

If you encounter any problem, please, consider submitting a [new issue](https://github.com/limix/geno-sugar/issues/new).

## Authors

- **Francesco Paolo Casale** - [https://github.com/fpcasale](https://github.com/fpcasale)

- **Danilo Horta** - [https://github.com/horta](https://github.com/horta)

- **Rachel Moore** - [https://github.com/rm18](https://github.com/rm18)

- **Oliver Stegle** - [https://github.com/ostegle](https://github.com/ostegle)

## License

This project is licensed under the Apache License (Version 2.0, January 2004) -

see the [LICENSE](LICENSE) file for details