https://github.com/limix/limix-lmm

LMMs for single variant testing
https://github.com/limix/limix-lmm

Last synced: 11 months ago
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LMMs for single variant testing

• Host: GitHub
• URL: https://github.com/limix/limix-lmm
• Owner: limix
• License: apache-2.0
• Created: 2018-09-26T04:35:44.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2019-01-27T21:11:25.000Z (over 7 years ago)
• Last Synced: 2024-11-02T06:37:25.515Z (over 1 year ago)
• Language: Python
• Size: 6.56 MB
• Stars: 2
• Watchers: 4
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# limix-lmm

[![Travis](https://img.shields.io/travis/com/limix/limix-lmm.svg?style=flat-square&label=linux%20%2F%20macos%20build)](https://travis-ci.com/limix/limix-lmm) [![Documentation](https://img.shields.io/readthedocs/limix-lmm.svg?style=flat-square&version=stable)](https://limix-lmm.readthedocs.io/)

This a standalone module that implements the basic functionalities of LMM-based models for genome-wide association studies.

However, we recommend using this module using [LIMIX2](https://limix.readthedocs.io/en/2.0.0/index.html).

## Install

From terminal, it can be installed using [pip](https://pypi.python.org/pypi/pip):

```bash

pip install limix-lmm

```

## Documentation

The public interface and a quick start in python are available at

[http://limix-lmm.readthedocs.io/](http://limix-lmm.readthedocs.io/).

## Problems

If you encounter any problem, please, consider submitting a [new issue](https://github.com/limix/limix-lmm/issues/new).

## Authors

- **Francesco Paolo Casale** - [https://github.com/fpcasale](https://github.com/fpcasale)

- **Danilo Horta** - [https://github.com/horta](https://github.com/horta)

- **Rachel Moore** - [https://github.com/rm18](https://github.com/rm18)

- **Oliver Stegle** - [https://github.com/ostegle](https://github.com/ostegle)

## License

This project is licensed under the Apache License (Version 2.0, January 2004) -

see the [LICENSE](LICENSE) file for details