https://github.com/limscoder/py_3_bio_hack
Playing around with Python 3
https://github.com/limscoder/py_3_bio_hack
Last synced: about 1 year ago
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Playing around with Python 3
- Host: GitHub
- URL: https://github.com/limscoder/py_3_bio_hack
- Owner: limscoder
- Created: 2014-11-10T06:45:21.000Z (over 11 years ago)
- Default Branch: master
- Last Pushed: 2020-09-04T22:06:42.000Z (over 5 years ago)
- Last Synced: 2025-01-12T11:49:14.373Z (about 1 year ago)
- Language: JavaScript
- Size: 515 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 2
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Metadata Files:
- Readme: README.md
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README
py_3_bio_hack
=============
Hacking together some Python 3 scripts for processing bio files.
**Parse sequence length percentages from fastq files**
fastq_length_report.py
**Parse sequence counts from fasta file**
fasta_frequency.py
**Annotate chromosome locations with gene names from gtf file.**
annotate.py
**Webapp UI (fastq quality inspector)**
Open ./webapp/dist/sequence/app.html in browser.
/usr/bin/open -a "/Applications/Google Chrome.app" ./webapp/dist/sequence/app.html
Project build (requires node/npm: brew install node)
cd webapp
npm install
grunt build