https://github.com/linsalrob/crapy
Cross-assembly in Python
https://github.com/linsalrob/crapy
Last synced: about 2 months ago
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Cross-assembly in Python
- Host: GitHub
- URL: https://github.com/linsalrob/crapy
- Owner: linsalrob
- License: mit
- Created: 2015-08-11T10:07:49.000Z (almost 11 years ago)
- Default Branch: master
- Last Pushed: 2015-08-17T23:24:19.000Z (almost 11 years ago)
- Last Synced: 2026-03-29T13:46:45.292Z (3 months ago)
- Language: Python
- Size: 184 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Cross Assembly in Python
Cross assembly is a way of pulling genomes from metagenomes. This is a python-ish implementation (not all of it is python) that I'm working on.
The initial steps of the cross assembly are detailed [http://tbb.bio.uu.nl/dutilh/CABBIO/](on Bas' UU page)
[CrAPy.ipynb](CrAPy.ipynb) is an ipython notebook with a lot of the implementation
[CrAPy.py](CrAPy.py) is an early linear implmentation
[CrAPy_mp.py](CrAPy_mp.py) is a multiprocessor version