https://github.com/lioscro/alaska-parse
Automated and friendly RNA-seq analysis (migrated to Parse Server)
https://github.com/lioscro/alaska-parse
automation docker docker-compose kallisto parse-server pipeline python3 rna-seq rna-seq-analysis rna-seq-pipeline rna-sequencing sleuth
Last synced: about 2 months ago
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Automated and friendly RNA-seq analysis (migrated to Parse Server)
- Host: GitHub
- URL: https://github.com/lioscro/alaska-parse
- Owner: Lioscro
- Created: 2019-06-04T05:15:08.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2024-07-18T17:31:15.000Z (10 months ago)
- Last Synced: 2025-02-11T16:37:58.850Z (4 months ago)
- Topics: automation, docker, docker-compose, kallisto, parse-server, pipeline, python3, rna-seq, rna-seq-analysis, rna-seq-pipeline, rna-sequencing, sleuth
- Language: JavaScript
- Homepage: http://alaska.caltech.edu
- Size: 4.02 MB
- Stars: 1
- Watchers: 3
- Forks: 0
- Open Issues: 15
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Metadata Files:
- Readme: README.md
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README
# Alaska: Automated and friendly RNA-seq analysis
Version: v1.7.2
RNA-sequencing (RNA-seq) provides a way to quantify differential gene expression and is used to discover novel gene functions and pathways. Although the molecular biology behind RNA-seq is fully understood, analysis of the data remains a significant bottleneck. Here, we introduce a RNA-seq framework that will allow analysis within hours of an RNA-seq experiment.