https://github.com/llrs/uncoupling
Testing RGCCA integration
https://github.com/llrs/uncoupling
multi-omics r rstats
Last synced: about 1 year ago
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Testing RGCCA integration
- Host: GitHub
- URL: https://github.com/llrs/uncoupling
- Owner: llrs
- Created: 2020-11-11T08:46:39.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2022-03-30T10:01:42.000Z (over 4 years ago)
- Last Synced: 2025-02-14T12:40:56.170Z (over 1 year ago)
- Topics: multi-omics, r, rstats
- Language: R
- Homepage:
- Size: 2.29 MB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Uncoupling
The goal of Uncoupling is to to analyze the data from ["Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease."](https://doi.org/10.1136/gutjnl-2016-311651) for integration efforts using [MCIA](https://bioconductor.org/packages/omicade4 "Function on omicade4") and [RGCCA](https://llrs.github.io/RGCCA/ "My modified version of RGCCA") as I propose (using the metadata) and test that the assumptions made with the [glioma's dataset generalize](https://github.com/llrs/sgcca_hyperparameters/).