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https://github.com/loglabs/mltrace

Coarse-grained lineage and tracing for machine learning pipelines.
https://github.com/loglabs/mltrace

devops machine-learning mlops pipeline-management tracing

Last synced: 10 days ago
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Coarse-grained lineage and tracing for machine learning pipelines.

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README 

        
# mltrace



[![mltrace](https://github.com/loglabs/mltrace/actions/workflows/python-package.yml/badge.svg)](https://github.com/loglabs/mltrace/actions/workflows/python-package.yml)

[![Documentation Status](https://readthedocs.org/projects/mltrace/badge/?version=latest)](https://mltrace.readthedocs.io/en/latest/?badge=latest)

![PyPI](https://img.shields.io/pypi/v/mltrace)

[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)



`mltrace` is a lightweight, open-source Python tool to get "bolt-on" observability in ML pipelines. It offers the following:



- interface to define data and ML tests for components in pipelines

- coarse-grained lineage and tracing

- Python API to log versions of data and pipeline components

- database to store information about component runs

- UI and CLI to show the trace of steps in a pipeline taken to produce an output, flag outputs for review, and identify what steps of the pipeline to investigate first when debugging



`mltrace` is designed specifically for Agile or multidisciplinary teams collaborating on machine learning or complex data pipelines. The prototype is very lofi, but this `README` contains instructions on how to run the prototype on your machine **if you are interested in developing.** For general usage instructions, please see the [official documentation](https://mltrace.readthedocs.io/en/latest/). The accompanying blog post can be found [here](https://www.shreya-shankar.com/introducing-mltrace/).



![screenshot](./res/home.png)



## Quickstart



You should have Docker installed on your machine. To get started, you will need to do 3 things:



1. Set up the database and Flask server

2. Run some pipelines with logging

3. Launch the UI



If you are interested in learning about specific `mltrace` concepts, please read [this page](https://mltrace.readthedocs.io/en/latest/concepts.html) in the official docs.



### Database setup (server-side)



First, you will need to create DB credentials. We use Postgres. There is a `.postgresenv` file in the root directory, but you should set your own values for the params.



Assuming you have Docker installed, you can run the following commands from the

root directory after cloning the most recent release:



```

docker-compose build

docker-compose up [-d]

```



And then to tear down the containers, you can run `docker-compose down`. Bring down the volumes as well, if you've made changes to DB schema using `docker-compose down --volumes`.



### Run pipelines (client-side)



To use the logging functions in dev mode, you will need to install various dependencies:



```

pip install -r requirements.txt

pip install -e .

```



Next, you will need to set the database URI. It is recommended to use environment variables for this. To set the database address, set the `DB_SERVER` variable:



```

export DB_SERVER=

```



where `` is either the IP address of a remote machine or `localhost` if running locally. If, when you set up the server, you changed the URI in `docker-compose.yaml`, you can set the `DB_URI` variable (which represents the entire database URI) client-side instead of `DB_SERVER`.



The files in the `examples` folder contain sample scripts you can run. For instance, if you run `examples/industry_ml.py`, you might get an output like:



```

> python examples/industry_ml.py

Final output id: aafknvtoag

```



And if you trace this output in the UI (`trace aafknvtoag`), you will get:



![screenshot](./res/industry_ml.png)



You can also look at `examples` for ways to integrate `mltrace` into your ML pipelines, or check out the [official documentation](https://mltrace.readthedocs.io/en/latest/).



### Launch UI (client-side)



Double check the Postgres credentials in `.flaskenv` match the credentials set in `.postgresenv`.



If you ran `docker-compose up` from the root directory, you can just navigate to the server's IP address at port 8080 (or `localhost:8080`) in your browser. To launch a dev version of the UI, navigate to `./mltrace/server/ui` and execute `yarn install` then `yarn start`. It should be served at [localhost:3000](localhost:3000). The UI is based on `create-react-app` and [`blueprintjs`](https://blueprintjs.com/docs/). Here's an example of what tracing an output would give:



![screenshot](./res/trace.png)



#### Commands supported in the UI



| Command | Description |

|---|---|

| `recent` | Shows recent component runs, also the home page|

| `history COMPONENT_NAME` | Shows history of runs for the component name. Defaults to 10 runs. Can specify number of runs by appending a positive integer to the command, like `history etl 15`|

| `inspect COMPONENT_RUN_ID` | Shows info for that component run ID |

| `trace OUTPUT_ID` | Shows a trace of steps for the output ID |

| `tag TAG_NAME` | Shows all components with the tag name |

| `flag OUTPUT_ID` | Flags an output ID for further review. Necessary to see any results from the `review` command. |

| `unflag OUTPUT_ID` | Unflags an output ID. Removes this output ID from any results from the `review` command. |

| `review` | Shows a list of output IDs flagged for review and the common component runs involved in producing the output IDs. The component runs are sorted from most frequently occurring to least frequently occurring. |



### Launch without UI (client-side)

If you want to launch database and api containers without the UI, you will run `docker-compose docker-compose-not-ui.yml up` from the root directory. If running correctly, you should see nothing displayed in the server's IP address at port 8080 (or `localhost:8080`) but the database and API service should work unaffectedly:



1. change directory to the level where docker-compose-not-ui.yml exist (root directory)

2. run `docker-compose -f docker-compose-not-ui.yml build` to build the image (skip this step if image already exist)

3. run `docker-compose -f docker-compose-not-ui.yml up` to bring up the service



### Using the CLI for querying



The following commands are supported via CLI:



- `history`

- `recent`

- `trace`

- `flag`

- `unflag`

- `review`



You can execute `mltrace --help` in your shell for usage instructions, or you can execute `mltrace command --help` for usage instructions for a specific command.



### Future directions



The following projects are in the immediate roadmap:



* API to log from any type of file, not just a Python file

* Prometheus integrations to monitor component output distributions

* Support for finer-grained lineage (at the record level)



### Contributing



Anyone is welcome to contribute, and your contribution is greatly appreciated! Feel free to either create issues or pull requests to address issues.



1. Fork the repo

2. Create your branch (`git checkout -b YOUR_GITHUB_USERNAME/somefeature`)

3. Make changes and add files to the commit (`git add .`)

4. Commit your changes (`git commit -m 'Add something'`)

5. Push to your branch (`git push origin YOUR_GITHUB_USERNAME/somefeature`)

6. Make a pull request