https://github.com/lolab-msm/zombie-apocalypse
Modeling a Zombie Apocalypse using ODEs and PySB
https://github.com/lolab-msm/zombie-apocalypse
Last synced: 19 days ago
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Modeling a Zombie Apocalypse using ODEs and PySB
- Host: GitHub
- URL: https://github.com/lolab-msm/zombie-apocalypse
- Owner: LoLab-MSM
- Created: 2021-07-29T21:28:39.000Z (about 5 years ago)
- Default Branch: main
- Last Pushed: 2022-11-24T11:12:15.000Z (over 3 years ago)
- Last Synced: 2025-10-27T19:56:12.207Z (10 months ago)
- Language: Jupyter Notebook
- Size: 21.5 KB
- Stars: 0
- Watchers: 5
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Zombie Apocalypse ODE tutorial
This tutorial serves as an introduction to modeling a dynamical system
using ordinary differential equations (ODEs).
## Run these models in Binder
Click the Binder link below to open the enclosed Jupyter Notebook on Binder.
Then open one of the Jupyter Notebook files on Binder for further instructions.
[](https://mybinder.org/v2/gh/lolab-vu/zombie-apocalypse/HEAD)
## Model Versions
Two versions of the model are included: a direct ODE representation using SciPy,
and a reaction "rule-based" representation using [PySB](https://pysb.org).
## Credits
* Zombie Apocalypse example by [Munz et al. 2009](https://mysite.science.uottawa.ca/rsmith43/Zombies.pdf)
* SciPy implementation by [Christopher Campo](https://scipy-cookbook.readthedocs.io/items/Zombie_Apocalypse_ODEINT.html)
* Jupyter Notebook interactivity and PySB conversion by Alex Lubbock