https://github.com/lpantano/bcbiosmallrna

R package to analyze data after small RNAseq with bcbio
https://github.com/lpantano/bcbiosmallrna

Last synced: about 1 month ago
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R package to analyze data after small RNAseq with bcbio

• Host: GitHub
• URL: https://github.com/lpantano/bcbiosmallrna
• Owner: lpantano
• License: mit
• Created: 2017-08-05T19:18:16.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2020-03-01T00:40:17.000Z (almost 5 years ago)
• Last Synced: 2024-10-14T15:26:21.719Z (3 months ago)
• Language: HTML
• Homepage: https://lpantano.github.io/bcbioSmallRna/
• Size: 17.7 MB
• Stars: 6
• Watchers: 3
• Forks: 2
• Open Issues: 3
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# bcbioSmallRna



[![Build Status](https://travis-ci.org/lpantano/bcbioSmallRna.svg?branch=master)](https://travis-ci.org/lpantano/bcbioSmallRna)

[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)

Quality control and differential expression for [bcbio][] small RNA-seq experiments.

## Installation

This is an [R][] package.

### [Bioconductor][] method

```r

BiocManager("lpantano/bcbioSmallRna")

```

### [devtools][] method

```r

install.packages("devtools")

devtools::install_github("lpantano/bcbioSmallRna")

```

[bcbio]: https://github.com/chapmanb/bcbio-nextgen

[bioconductor]: https://bioconductor.org

[devtools]: https://cran.r-project.org/package=devtools

[r]: https://www.r-project.org

[rmarkdown]: http://rmarkdown.rstudio.com