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https://github.com/lpantano/isomirs
analyze isomiRs from seqbuster tool
https://github.com/lpantano/isomirs
analyze-isomirs bioconductor isomirs mirna r
Last synced: about 2 months ago
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analyze isomiRs from seqbuster tool
- Host: GitHub
- URL: https://github.com/lpantano/isomirs
- Owner: lpantano
- License: mit
- Created: 2014-06-26T16:21:27.000Z (over 10 years ago)
- Default Branch: main
- Last Pushed: 2024-08-23T19:17:37.000Z (4 months ago)
- Last Synced: 2024-10-14T15:26:01.519Z (2 months ago)
- Topics: analyze-isomirs, bioconductor, isomirs, mirna, r
- Language: R
- Homepage: http://lpantano.github.io/isomiRs/
- Size: 28.6 MB
- Stars: 8
- Watchers: 3
- Forks: 3
- Open Issues: 17
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS
- License: LICENSE
Awesome Lists containing this project
README
isomiRs
=======[![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.45382.svg)](http://dx.doi.org/10.5281/zenodo.45382)
[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
[![Build status](https://secure.travis-ci.org/lpantano/isomiRs.png)](https://travis-ci.org/lpantano/isomiRs)
[![coverage](https://img.shields.io/codecov/c/github/lpantano/isomiRs/master.svg)](https://codecov.io/github/lpantano/isomiRs?branch=master)Analyze isomiRs from seqbuster tool or any BAM file after using [seqbuster miraligner](http://seqcluster.readthedocs.io/mirna_annotation.html#mirna-isomirs-annotation-with-python)
[Bioconductor]: https://bioconductor.org
[devtools]: https://cran.r-project.org/package=devtools
[R]: https://www.r-project.org## Installation
This is an [R][] package.
### [Bioconductor][] stable version
```r
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
install.packages("BiocManager")
BiocManager::install("isomiRs")
```### [Bioconductor][] latest version
```r
devtools::install_git("https://[email protected]/packages/isomiRs")
```### [devtools][] development version
```r
install.packages("devtools")
devtools::install_github("lpantano/isomiRs")
```