https://github.com/lpantano/isomirs

analyze isomiRs from seqbuster tool
https://github.com/lpantano/isomirs

analyze-isomirs bioconductor isomirs mirna r

Last synced: 4 months ago
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analyze isomiRs from seqbuster tool

• Host: GitHub
• URL: https://github.com/lpantano/isomirs
• Owner: lpantano
• License: mit
• Created: 2014-06-26T16:21:27.000Z (over 10 years ago)
• Default Branch: main
• Last Pushed: 2024-08-23T19:17:37.000Z (6 months ago)
• Last Synced: 2024-10-14T15:26:01.519Z (4 months ago)
• Topics: analyze-isomirs, bioconductor, isomirs, mirna, r
• Language: R
• Homepage: http://lpantano.github.io/isomiRs/
• Size: 28.6 MB
• Stars: 8
• Watchers: 3
• Forks: 3
• Open Issues: 17
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS
  • License: LICENSE

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isomiRs

=======



[![DOI](https://zenodo.org/badge/doi/10.5281/zenodo.45382.svg)](http://dx.doi.org/10.5281/zenodo.45382)

[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)

[![Build status](https://secure.travis-ci.org/lpantano/isomiRs.png)](https://travis-ci.org/lpantano/isomiRs)

[![coverage](https://img.shields.io/codecov/c/github/lpantano/isomiRs/master.svg)](https://codecov.io/github/lpantano/isomiRs?branch=master)

Analyze isomiRs from seqbuster tool  or any BAM file after using [seqbuster miraligner](http://seqcluster.readthedocs.io/mirna_annotation.html#mirna-isomirs-annotation-with-python)

[Bioconductor]: https://bioconductor.org

[devtools]: https://cran.r-project.org/package=devtools

[R]: https://www.r-project.org

## Installation

This is an [R][] package.

### [Bioconductor][] stable version

```r

if (!requireNamespace("BiocManager", quietly=TRUE))

    install.packages("BiocManager")

install.packages("BiocManager")

BiocManager::install("isomiRs")

```

### [Bioconductor][] latest version

```r

devtools::install_git("https://[email protected]/packages/isomiRs")

```

### [devtools][] development version

```r

install.packages("devtools")

devtools::install_github("lpantano/isomiRs")

```