https://github.com/lren-chuv/i2b2-flattening

Generate a flat CSV file from an I2B2 data (containing brain features, demographic data, etc).
https://github.com/lren-chuv/i2b2-flattening

data-factory

Last synced: 3 months ago
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Generate a flat CSV file from an I2B2 data (containing brain features, demographic data, etc).

• Host: GitHub
• URL: https://github.com/lren-chuv/i2b2-flattening
• Owner: LREN-CHUV
• License: apache-2.0
• Created: 2017-04-19T17:07:46.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2024-07-10T04:27:41.000Z (11 months ago)
• Last Synced: 2025-01-19T15:34:15.669Z (4 months ago)
• Topics: data-factory
• Language: Python
• Size: 39.1 KB
• Stars: 0
• Watchers: 5
• Forks: 1
• Open Issues: 14
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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# I2B2 to Flat CSV

## Introduction

This is a tool to generate a flat CSV file containing brain features read from an I2B2 DB.

## Usage

Run: `docker run --rm -v :/input_folder -v :/output_folder hbpmip/i2b2-flattening 

--dataset_prefix 

--output_file 

--volumes_list_file 

--scores_list_file `

Note that if you do not use custom volumes/scores files, there is no need to mount an input_folder volume.