https://github.com/ltla/csaw

Clone of the Bioconductor repository for the csaw package.
https://github.com/ltla/csaw

bioconductor-package chip-seq

Last synced: 11 months ago
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Clone of the Bioconductor repository for the csaw package.

• Host: GitHub
• URL: https://github.com/ltla/csaw
• Owner: LTLA
• Created: 2017-09-09T10:10:50.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2025-01-29T16:59:24.000Z (over 1 year ago)
• Last Synced: 2025-03-24T06:04:50.289Z (about 1 year ago)
• Topics: bioconductor-package, chip-seq
• Language: R
• Homepage: https://bioconductor.org/packages/devel/bioc/html/csaw.html
• Size: 11.3 MB
• Stars: 3
• Watchers: 3
• Forks: 3
• Open Issues: 9
• Metadata Files:
  • Readme: README.md

Awesome Lists containing this project

README

          
# ChIP-seq analyses with sliding windows

|Environment|Status|

|---|---|

|[BioC-release](https://bioconductor.org/packages/release/bioc/html/csaw.html)|[![Release OK](https://bioconductor.org/shields/build/release/bioc/csaw.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/csaw/)|

|[BioC-devel](https://bioconductor.org/packages/devel/bioc/html/csaw.html)|[![Devel OK](https://bioconductor.org/shields/build/devel/bioc/csaw.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/csaw/)|

**csaw** uses sliding windows to detect differential binding in ChIP-seq data,

This eliminates the need for a prior peak-calling step and the associated statistical issues like double-dipping. 

Check out the [Bioconductor landing page](https://bioconductor.org/packages/csaw) for more details.