https://github.com/luispedro/pyslic
PySLIC
https://github.com/luispedro/pyslic
Last synced: about 1 year ago
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PySLIC
- Host: GitHub
- URL: https://github.com/luispedro/pyslic
- Owner: luispedro
- Created: 2011-09-24T20:18:30.000Z (almost 15 years ago)
- Default Branch: master
- Last Pushed: 2016-01-05T12:27:29.000Z (over 10 years ago)
- Last Synced: 2025-04-01T01:51:11.476Z (about 1 year ago)
- Language: Python
- Homepage:
- Size: 5.25 MB
- Stars: 5
- Watchers: 3
- Forks: 2
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGES
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README
# PySLIC: Python Subcellular Location Image Classifier
This is a re-implementation in Python of the Murphy Lab image classification
code.
# INSTALL
python setup.py install
or
python setup.py install --prefix=
# DEPENDENCIES
## Hard Dependencies
These are needed for Python 2.5 to run.
The dependencies are fairly standard libraries:
- numpy
- scipy
- [mahotas](http://mahotas.readthedocs.org)
On ubuntu, you can use the following command to install dependencies:
sudo aptitude install python-numpy python-scipy
# Citation
PySLIC does not have a paper associated with it, but is a wrapper around
[mahotas](http://mahotas.readthedocs.org). Thus, if you use this in a
scientific publication, please cite:
**Luis Pedro Coelho** Mahotas: Open source software for scriptable computer
vision in Journal of Open Research Software, vol 1, 2013.
[DOI](http://dx.doi.org/10.5334/jors.ac)